BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB015H09LP1|AL426924
(741 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1388 0.0
>3x_Contig1781
Length = 20717
Score = 1388 bits (695), Expect = 0.0
Identities = 729/741 (98%), Gaps = 3/741 (0%)
Strand = Plus / Minus
Query: 1 cacttggttgtcctcttcttcgtctgacktaaaatcatccacatcgctgtactccttgct 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1895 cacttggttgtcctcttcttcgtctgacgcaaaatcatccacatcgctgtactccttgct 1836
Query: 61 catcgtgttattgttgtccgttagttaacctgctgaaccttgtggtctgttgtctcttct 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 catcgtgttattgttgtcc-ttagttaacctgctgaaccttgtggtctgttgtctcttct 1777
Query: 121 ctcatgtatatggktcatctcatctcatctcatctcatcgctttagttccaaatttttca 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 ctcatgtatatggttcatctcatctcatctcatctcatcgctttagttccaaatttttca 1717
Query: 181 gtatggcactcactgtacagaagaratgggaaccaatcgtactggacgacggaccgatac 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1716 gtatggcactcactgtacagaagaaatgggaaccaatcgtactggacgacggaccgatac 1657
Query: 241 cacaatgaagtaacgggtctgtagccggtgtttgcagcctgtatggccggagatcgcgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 cacaatgaagtaacgggtctgtagccggtgtttgcagcctgtatggccggagatcgcgaa 1597
Query: 301 cttgatccatgtctgctcttgctgcacgcttgagcagctttctcagtgaggtgtgcaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 cttgatccatgtctgctcttgctgcacgcttgagcagctttctcagtgaggtgtgcaggt 1537
Query: 361 cttacatacatattctatatagaracggcttaaaactacgtcaaagcaggaacctcccca 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1536 cttacatacatattctatatagaaacggcttaaaactacgtcaaagcaggaacctcccca 1477
Query: 421 ctctcttggcgtagttccctccgctttgctaccagagttgccattgccattgctcattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 ctctcttggcgtagttccctccgctttgctaccagagttgccattgccattgctcattgc 1417
Query: 481 cattgacattgccgttgtcgttccactgttatccggtttgtgacaactggtgactggatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 cattgacattgccgttgtcgttccactgttatccggtttgtgacaactggtgactggatt 1357
Query: 541 aatartraccccgacacgaatggcaagaaaccggaaaaaccttgtccgttcgagagatta 600
|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 aataataa-cccgacacgaatggcaagaaaccggaaaaaccttgtccgttcgagagatta 1298
Query: 601 atccagatatataaaggggaagtgcttccgatatagatgaacaacacatgtatccttgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 atccagatatataaaggggaagtgcttccgatatagatgaacaacacatgtatccttgat 1238
Query: 661 ctaattggcytgacttgttgatttatagtcgccccaatacaaacaacacacactcgatat 720
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 ctaattggcttgacttgttgatttatagtcgccccaatacaaacaacacacactcgatat 1178
Query: 721 attttwacaatatgtcagcac 741
||||| |||||||||| ||||
Sbjct: 1177 atttt-acaatatgtctgcac 1158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5065
Number of Sequences: 1807
Number of extensions: 5065
Number of successful extensions: 747
Number of sequences better than 1.0e-20: 1
length of query: 741
length of database: 10,358,551
effective HSP length: 16
effective length of query: 725
effective length of database: 10,329,639
effective search space: 7488988275
effective search space used: 7488988275
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)